PCDB : Pairwise Comparison Database


DNA-DNA

NC_003070     Arabidopsis thaliana chromosome 1, complete sequence.

NC_003071     Arabidopsis thaliana chromosome 2, complete sequence.

NC_003074     Arabidopsis thaliana chromosome 3, complete sequence.

NC_003075     Arabidopsis thaliana chromosome 4, complete sequence.

NC_003076     Arabidopsis thaliana chromosome 5, complete sequence.

NC_000854     Aeropyrum pernix, complete genome.

NC_003062     Agrobacterium tumefaciens strain C58 circular chromosome, complete

NC_003063     Agrobacterium tumefaciens strain C58 linear chromosome, complete

NC_003064     Agrobacterium tumefaciens strain C58 plasmid AT, complete sequence.

NC_003065     Agrobacterium tumefaciens str. C58 (Cereon) plasmid Ti, complete

NC_003304     Agrobacterium tumefaciens str. C58 (U. Washington) chromosome

NC_003305     Agrobacterium tumefaciens str. C58 (U. Washington) chromosome

NC_003306     Agrobacterium tumefaciens str. C58 (U. Washington) plasmid AT,

NC_003308     Agrobacterium tumefaciens str. C58 (U. Washington) plasmid Ti,

NC_000918     Aquifex aeolicus complete genome.

NC_001880     Aquifex aeolicus plasmid ece1, complete sequence.

NC_000917     Archaeoglobus fulgidus DSM 4304, complete genome.

NC_003980     Bacillus anthracis str. A2012 plasmid pXO1, complete sequence.

NC_003981     Bacillus anthracis str. A2012 plasmid pXO2, complete sequence.

NC_003995     Bacillus anthracis A2012, unfinished sequence, whole genome shotgun

NC_003997     Bacillus anthracis str. Ames, complete genome.

NC_004721     Bacillus cereus ATCC 14579 plasmid pBClin15, complete sequence.

NC_004722     Bacillus cereus ATCC 14579, complete genome.

NC_003909     Bacillus cereus ATCC 10987, complete genome.

NC_002570     Bacillus halodurans, complete genome.

NC_000964     Bacillus subtilis, complete genome.

NC_004663     Bacteroides thetaiotaomicron VPI-5482, complete genome.

NC_005363     Bdellovibrio bacteriovorus HD100, complete genome.

NC_004307     Bifidobacterium longum NCC2705, complete genome.

NC_005061     Candidatus Blochmannia floridanus, complete genome.

NC_002927     Bordetella bronchiseptica RB50, complete genome.

NC_002928     Bordetella parapertussis 12822, complete genome.

NC_002929     Bordetella pertussis Tohama I, complete genome.

NC_000948     Borrelia burgdorferi B31 plasmid cp32-1, complete sequence.

NC_000949     Borrelia burgdorferi B31 plasmid cp32-3, complete sequence.

NC_000950     Borrelia burgdorferi B31 plasmid cp32-4, complete sequence.

NC_000951     Borrelia burgdorferi B31 plasmid cp32-6, complete sequence.

NC_000952     Borrelia burgdorferi B31 plasmid cp32-7, complete sequence.

NC_000953     Borrelia burgdorferi B31 plasmid cp32-8, complete sequence.

NC_000954     Borrelia burgdorferi B31 plasmid cp32-9, complete sequence.

NC_000955     Borrelia burgdorferi B31 plasmid lp21, complete sequence.

NC_000956     Borrelia burgdorferi B31 plasmid lp56, complete sequence.

NC_000957     Borrelia burgdorferi B31 plasmid lp5, complete sequence.

NC_001318     Borrelia burgdorferi, complete genome.

NC_001849     Borrelia burgdorferi plasmid lp17, complete sequence.

NC_001850     Borrelia burgdorferi plasmid lp25, complete sequence.

NC_001851     Borrelia burgdorferi plasmid lp28-1, complete sequence.

NC_001852     Borrelia burgdorferi plasmid lp28-2, complete sequence.

NC_001853     Borrelia burgdorferi plasmid lp28-3, complete sequence.

NC_001854     Borrelia burgdorferi plasmid lp28-4, complete sequence.

NC_001855     Borrelia burgdorferi plasmid lp36, complete sequence.

NC_001856     Borrelia burgdorferi plasmid lp38, complete sequence.

NC_001857     Borrelia burgdorferi plasmid lp54, complete sequence.

NC_001903     Borrelia burgdorferi plasmid cp26, complete sequence.

NC_001904     Borrelia burgdorferi plasmid cp9, complete sequence.

NC_004463     Bradyrhizobium japonicum, complete genome.

NC_003317     Brucella melitensis chromosome I, complete sequence.

NC_003318     Brucella melitensis chromosome II, complete sequence.

NC_004310     Brucella suis 1330 chromosome I, complete sequence.

NC_004311     Brucella suis 1330 chromosome II, complete sequence.

NC_004545     Buchnera aphidicola (Baizongia pistaciae), complete genome.

NC_004061     Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome.

NC_002252     Buchnera sp. APS plasmid pTrp, complete sequence.

NC_002253     Buchnera sp. APS plasmid pLeu, complete sequence.

NC_002528     Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete

NC_002163     Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome.

NC_002696     Caulobacter crescentus CB15, complete genome.

NC_002182     Chlamydia muridarum plasmid pMoPn, complete sequence.

NC_002620     Chlamydia muridarum, complete genome.

NC_000117     Chlamydia trachomatis, complete genome.

NC_003361     Chlamydophila caviae GPIC, complete genome.

NC_004720     Chlamydophila caviae GPIC plasmid pCpGP1, complete sequence.

NC_002179     Chlamydia pneumoniae AR39, complete genome.

NC_000922     Chlamydophila pneumoniae CWL029 complete genome.

NC_002491     Chlamydophila pneumoniae J138, complete genome.

NC_005043     Chlamydophila pneumoniae TW-183, complete genome.

NC_002932     Chlorobium tepidum TLS, complete genome.

NC_005085     Chromobacterium violaceum ATCC 12472, complete genome.

NC_001988     Clostridium acetobutylicum plasmid pSOL1, complete sequence.

NC_003030     Clostridium acetobutylicum ATCC824 complete genome.

NC_003042     Clostridium perfringens str. 13 plasmid pCP13, complete sequence.

NC_003366     Clostridium perfringens, complete genome.

NC_004557     Clostridium tetani E88, complete genome.

NC_002935     Corynebacterium diphtheriae, complete genome.

NC_004369     Corynebacterium efficiens YS-314, complete genome.

NC_003450     Corynebacterium glutamicum ATCC 13032, complete genome.

NC_002971     Coxiella burnetii RSA 493, complete genome.

NC_000958     Deinococcus radiodurans plasmid MP1, complete sequence.

NC_000959     Deinococcus radiodurans plasmid CP1, complete sequence.

NC_001263     Deinococcus radiodurans chromosome 1, complete sequence.

NC_001264     Deinococcus radiodurans chromosome 2, complete sequence.

NC_002937     Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete

NC_005863     Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

NC_004668     Enterococcus faecalis V583, complete genome.

NC_004431     Escherichia coli CFT073, complete genome.

NC_000913     Escherichia coli K12, complete genome.

NC_002127     Escherichia coli O157:H7 plasmid pOSAK1, complete sequence.

NC_002128     Escherichia coli O157:H7 plasmid pO157, complete sequence.

NC_002695     Escherichia coli O157:H7, complete genome.

NC_002655     Escherichia coli O157:H7 EDL933, complete genome.

NC_003454     Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete

NC_002939     Geobacter sulfurreducens PCA, complete genome.

NC_005125     Gloeobacter violaceus, complete genome.

NC_002940     Haemophilus ducreyi 35000HP, complete genome.

NC_000907     Haemophilus influenzae Rd, complete genome.

NC_001869     Halobacterium sp. NRC-1 plasmid pNRC100, complete sequence.

NC_002607     Halobacterium sp. NRC-1, complete genome.

NC_002608     Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence.

NC_004917     Helicobacter hepaticus ATCC 51449, complete genome.

NC_000915     Helicobacter pylori 26695, complete genome.

NC_000921     Helicobacter pylori, strain J99 complete genome.

NC_005362     Lactobacillus johnsonii NCC 533, complete genome.

NC_004567     Lactobacillus plantarum WCFS1, complete genome.

NC_002662     Lactococcus lactis subsp. lactis, complete genome.

NC_004342     Leptospira interrogans serovar lai str. 56601 chromosome I,

NC_004343     Leptospira interrogans serovar lai str. 56601 chromosome II,

NC_005823     Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

NC_005824     Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

NC_003212     Listeria innocua Clip11262, complete genome.

NC_003383     Listeria innocua plasmid pLI100, complete sequence.

NC_003210     Listeria monocytogenes strain EGD, complete genome.

NC_002973     Listeria monocytogenes str. 4b F2365, complete genome.

NC_002678     Mesorhizobium loti, complete genome.

NC_002679     Mesorhizobium loti plasmid pMLa, complete sequence.

NC_002682     Mesorhizobium loti plasmid pMLb, complete sequence.

NC_000916     Methanobacterium thermoautotrophicum str. Delta H complete genome.

NC_000909     Methanococcus jannaschii complete genome.

NC_001732     Methanocaldococcus jannaschii extrachrom large extra-chromosomal

NC_001733     Methanocaldococcus jannaschii extrachrom small extra-chromosomal

NC_005791     Methanococcus maripaludis, complete genome.

NC_003551     Methanopyrus kandleri AV19, complete genome.

NC_003552     Methanosarcina acetivorans str. C2A, complete genome.

NC_003901     Methanosarcina mazei strain Goe1, complete genome.

NC_002944     Mycobacterium avium subsp. paratuberculosis str. k10, complete

NC_002945     Mycobacterium bovis subsp. bovis AF2122/97, complete genome.

NC_002677     Mycobacterium leprae strain TN complete genome.

NC_002755     Mycobacterium tuberculosis CDC1551, complete genome.

NC_000962     Mycobacterium tuberculosis H37Rv, complete genome.

NC_004829     Mycoplasma gallisepticum R, complete genome.

NC_000908     Mycoplasma genitalium, complete genome.

NC_005364     Mycoplasma mycoides subsp. mycoides SC, complete genome.

NC_004432     Mycoplasma penetrans, complete genome.

NC_000912     Mycoplasma pneumoniae, complete genome.

NC_002771     Mycoplasma pulmonis complete genome.

NC_005213     Nanoarchaeum equitans Kin4-M, complete genome.

NC_003112     Neisseria meningitidis serogroup B strain MC58 complete genome.

NC_003116     Neisseria meningitidis serogroup A strain Z2491 complete genome.

NC_004757     Nitrosomonas europaea ATCC 19718, complete genome.

NC_003240     Nostoc sp. PCC 7120 plasmid pCC7120beta, complete sequence.

NC_003241     Nostoc sp. PCC 7120 plasmid pCC7120zeta, complete sequence.

NC_003267     Nostoc sp. PCC 7120 plasmid pCC7120gamma, complete sequence.

NC_003270     Nostoc sp. PCC 7120 plasmid pCC7120epsilon, complete sequence.

NC_003272     Nostoc sp. PCC 7120 complete genome.

NC_003273     Nostoc sp. PCC 7120 plasmid pCC7120delta, complete sequence.

NC_003276     Nostoc sp. PCC 7120 plasmid pCC7120alpha, complete sequence.

NC_004193     Oceanobacillus iheyensis HTE831, complete genome.

NC_005303     Onion yellows phytoplasma, complete genome.

NC_005861     Parachlamydia sp. UWE25, complete genome.

NC_002663     Pasteurella multocida, complete genome.

NC_005126     Photorhabdus luminescens subsp. laumondii TTO1, complete genome.

NC_005027     Pirellula sp., complete genome.

NC_002950     Porphyromonas gingivalis W83, complete genome.

NC_005042     Prochlorococcus marinus subsp. marinus str. CCMP1375, complete

NC_005072     Prochlorococcus marinus subsp. pastoris str. CCMP1378, complete

NC_005071     Prochlorococcus marinus str. MIT 9313, complete genome.

NC_002516     Pseudomonas aeruginosa PA01, complete genome.

NC_002947     Pseudomonas putida KT2440, complete genome.

NC_004578     Pseudomonas syringae pv. tomato str. DC3000, complete genome.

NC_003364     Pyrobaculum aerophilum, complete genome.

NC_000868     Pyrococcus abyssi, complete genome.

NC_003413     Pyrococcus furiosus DSM 3638, complete genome.

NC_000961     Pyrococcus horikoshii, complete genome.

NC_003295     Ralstonia solanacearum, complete genome.

NC_003296     Ralstonia solanacearum strain GMI1000 megaplasmid pGMI1000MP,

NC_005296     Rhodopseudomonas palustris, complete genome.

NC_003103     Rickettsia conorii Malish 7, complete genome.

NC_000963     Rickettsia prowazekii strain Madrid E, complete genome.

NC_003198     Salmonella enterica subsp. enterica serovar Typhi, complete genome.

NC_003384     Salmonella enterica subsp. enterica serovar Typhi plasmid pHCM1,

NC_003385     Salmonella enterica subsp. enterica serovar Typhi plasmid pHCM2,

NC_004631     Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

NC_003197     Salmonella typhimurium LT2, complete genome.

NC_003277     Salmonella typhimurium LT2 plasmid pSLT, complete sequence.

NC_004347     Shewanella oneidensis MR-1, complete genome.

NC_004349     Shewanella oneidensis MR-1 megaplasmid pMR-1, complete sequence.

NC_004337     Shigella flexneri 2a str. 301, complete genome.

NC_004741     Shigella flexneri 2a str. 2457T, complete genome.

NC_003037     Sinorhizobium meliloti plasmid pSymA, complete sequence.

NC_003047     Sinorhizobium meliloti 1021 complete genomes.

NC_003078     Sinorhizobium meliloti plasmid pSymB, complete sequence.

NC_003923     Staphylococcus aureus subsp. aureus MW2, complete genome.

NC_002758     Staphylococcus aureus strain Mu50, complete genome.

NC_002774     Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp, complete

NC_002745     Staphylococcus aureus subsp. aureus N315, complete genome.

NC_003140     Staphylococcus aureus subsp. aureus N315 plasmid pN315, complete

NC_004116     Streptococcus agalactiae 2603V/R, complete genome.

NC_004461     Staphylococcus epidermidis ATCC 12228, complete genome.

NC_004368     Streptococcus agalactiae NEM316, complete genome.

NC_004350     Streptococcus mutans UA159, complete genome.

NC_003098     Streptococcus pneumoniae R6 complete genome.

NC_003028     Streptococcus pneumoniae, complete genome.

NC_002737     Streptococcus pyogenes, complete genome.

NC_004070     Streptococcus pyogenes MGAS315, complete genome.

NC_003485     Streptococcus pyogenes strain MGAS8232, complete genome.

NC_004606     Streptococcus pyogenes SSI-1, complete genome.

NC_003155     Streptomyces avermitilis MA-4680, complete genome.

NC_004719     Streptomyces avermitilis MA-4680 plasmid SAP1, complete sequence.

NC_003888     Streptomyces coelicolor A3(2), complete genome.

NC_003903     Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence.

NC_003904     Streptomyces coelicolor A3(2) plasmid SCP2, complete sequence.

NC_002754     Sulfolobus solfataricus, complete genome.

NC_003106     Sulfolobus tokodaii, complete genome.

NC_005070     Synechococcus sp. WH 8102, complete genome.

NC_000911     Synechocystis sp. PCC 6803, complete genome.

NC_003869     Thermoanaerobacter tengcongensis strain MB4T, complete genome.

NC_002578     Thermoplasma acidophilum, complete genome.

NC_002689     Thermoplasma volcanium, complete genome.

NC_004113     Thermosynechococcus elongatus BP-1, complete genome.

NC_000853     Thermotoga maritima, complete genome.

NC_005835     Thermus thermophilus HB27, complete genome.

NC_002967     Treponema denticola ATCC 35405, complete genome.

NC_000919     Treponema pallidum subsp. pallidum str. Nichols complete genome.

NC_004551     Tropheryma whipplei TW08/27, complete genome.

NC_004572     Tropheryma whipplei str. Twist, complete genome.

NC_002162     Ureaplasma urealyticum, complete genome.

NC_002505     Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

NC_002506     Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete

NC_004603     Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

NC_004605     Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

NC_004459     Vibrio vulnificus CMCP6 chromosome I, complete sequence.

NC_004460     Vibrio vulnificus CMCP6 chromosome II, complete sequence.

NC_005128     Vibrio vulnificus YJ016 plasmid pYJ016, complete sequence.

NC_005139     Vibrio vulnificus YJ016 chromosome I, complete sequence.

NC_005140     Vibrio vulnificus YJ016 chromosome II, complete sequence.

NC_004344     Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,

NC_002978     Wolbachia endosymbiont of Drosophila melanogaster, complete genome.

NC_005090     Wolinella succinogenes, complete genome.

NC_003902     Xanthomonas campestris pv. campestris str. ATCC 33913, complete

NC_003919     Xanthomonas axonopodis pv. citri str. 306, complete genome.

NC_002488     Xylella fastidiosa 9a5c, complete genome.

NC_002489     Xylella fastidiosa plasmid pXF1.3, complete sequence.

NC_002490     Xylella fastidiosa plasmid pXF51, complete sequence.

NC_004554     Xylella fastidiosa Temecula1 plasmid pXFPD1.3, complete sequence.

NC_004556     Xylella fastidiosa Temecula1, complete genome.

NC_003131     Yersinia pestis CO92 plasmid pCD1, complete sequence.

NC_003132     Yersinia pestis CO92 plasmid pPCP1, complete sequence.

NC_003134     Yersinia pestis CO92 plasmid pMT1, complete sequence.

NC_003143     Yersinia pestis strain CO92, complete genome.

NC_004088     Yersinia pestis KIM, complete genome.

NC_005810     Yersinia pestis biovar Mediaevails str. 91001, complete genome.

NC_005813     Yersinia pestis biovar Mediaevails str. 91001 plasmid pCD1,

NC_005814     Yersinia pestis biovar Mediaevails str. 91001 plasmid pCRY,

NC_005815     Yersinia pestis biovar Mediaevails str. 91001 plasmid pMT1,

NC_005816     Yersinia pestis biovar Mediaevails str. 91001 plasmid pPCP1,

NC_003279     Caenorhabditis elegans chromosome I, complete sequence.

NC_004325     Plasmodium falciparum 3D7, complete genome.

NC_004314     Plasmodium falciparum 3D7 chromosome 10, complete sequence.

NC_004315     Plasmodium falciparum 3D7 chromosome 11, complete sequence.

NC_004316     Plasmodium falciparum 3D7 chromosome 12, complete sequence.

NC_004331     Plasmodium falciparum 3D7 chromosome 13, *** SEQUENCING IN PROGRESS

NC_004317     Plasmodium falciparum 3D7 chromosome 14, complete sequence.

NC_000910     Plasmodium falciparum 3D7 chromosome 2, complete sequence.

NC_000521     Plasmodium falciparum 3D7, complete genome.

NC_004318     Plasmodium falciparum 3D7 chromosome 4, complete sequence.

NC_004326     Plasmodium falciparum 3D7 chromosome 5, complete sequence.

NC_004327     Plasmodium falciparum 3D7 chromosome 6, *** SEQUENCING IN PROGRESS

NC_004328     Plasmodium falciparum 3D7 chromosome 7, *** SEQUENCING IN PROGRESS

NC_004329     Plasmodium falciparum 3D7 chromosome 8, *** SEQUENCING IN PROGRESS

NC_004330     Plasmodium falciparum 3D7, complete genome.

NC_001133     Saccharomyces cerevisiae chromosome I, complete chromosome

NC_001134     Saccharomyces cerevisiae chromosome II, complete chromosome

NC_001135     Saccharomyces cerevisiae chromosome III, complete chromosome

NC_001136     Saccharomyces cerevisiae chromosome IV, complete chromosome

NC_001141     Saccharomyces cerevisiae chromosome IX, complete chromosome

NC_001224     Saccharomyces cerevisiae mitochondrion, complete genome.

NC_001137     Saccharomyces cerevisiae chromosome V, complete chromosome

NC_001138     Saccharomyces cerevisiae chromosome VI, complete chromosome

NC_001139     Saccharomyces cerevisiae chromosome VII, complete chromosome

NC_001140     Saccharomyces cerevisiae chromosome VIII, complete chromosome

NC_001142     Saccharomyces cerevisiae chromosome X, complete chromosome

NC_001143     Saccharomyces cerevisiae chromosome XI, complete chromosome

NC_001144     Saccharomyces cerevisiae chromosome XII, complete chromosome

NC_001145     Saccharomyces cerevisiae chromosome XIII, complete chromosome

NC_001146     Saccharomyces cerevisiae chromosome XIV, complete chromosome

NC_001147     Saccharomyces cerevisiae chromosome XV, complete chromosome

NC_001148     Saccharomyces cerevisiae chromosome XVI, complete chromosome

NT_033778     Drosophila melanogaster chromosome 2R, complete sequence.

NT_033779     Drosophila melanogaster chromosome 2L complete sequence.

NT_033777     Drosophila melanogaster chromosome 3R, complete sequence.

NT_037436     Drosophila melanogaster chromosome 3L, complete sequence.

NC_004353     Drosophila melanogaster chromosome 4 complete sequence.

NC_004354     Drosophila melanogaster chromosome X complete sequence.

NC_003229     Encephalitozoon cuniculi chromosome II, complete sequence.

NC_003230     chromosome III of strain GB-M1 of Encephalitozoon cuniculi

NC_003231     Encephalitozoon cuniculi chromosome IV, complete sequence.

NC_003232     chromosome V of strain GB-M1 of Encephalitozoon cuniculi

NC_003233     Encephalitozoon cuniculi chromosome VI, complete sequence.

NC_003234     Encephalitozoon cuniculi chromosome VII, complete sequence.

NC_003235     chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi

NC_003236     Encephalitozoon cuniculi chromosome X, complete sequence.

NC_003237     Encephalitozoon cuniculi chromosome XI, complete sequence.

NC_003238     chromosome IX of strain GB-M1 of Encephalitozoon cuniculi

NC_003242     Encephalitozoon cuniculi chromosome I, complete sequence.

NC_003424     Schizosaccharomyces pombe chromosome I, complete sequence.

NC_003423     S.pombe chromosome II.

NC_003421     Schizosaccharomyces pombe chromosome III, complete sequence.


Sun Kim Group, School of Informatics, Indiana University, Bloomington, IN, USA